INTRODUCTION TO OMICS TECHNOLOGIES

MBGE345

Course Code: MBGE345
Semester: -
Theory+Practice: 3 + 0
ECTS: 4

Course Type

Elective Course

Course Level

Bachelor's Degree

Year of Study

Semester

ECTS

Name of Lecturer(s)

Associate Professor Ceyhun Kayıhan

Learning Outcomes

At the end of this course, the students;

Learn the historical perspectives of omics technologies and their types.
Learn the usage areas and current applications of genomics, functional genomics and proteomics technologies.
Learn the system biology by combining data from omics technologies.

Mode of Delivery

Face to face

Prerequisites

Recommended Optional Programme Components

None

Course Description

In this course, the students learn the historical perspectives of omics technologies and their types and learn the usage areas and current applications of genomics and functional genomics and proteomics.

Course Contents

WEEK	TOPICS
1^st Week	Introduction, historical perpesctive
2^nd Week	Genes, genomes and human genome projects
3^rd Week	Genomes of model organisms, high capacity vectors
4^th Week	DNA sequencing methods
5^th Week	Genome mapping
6^th Week	Genome sequencing methods
7^th Week	Genome sequencing annotations
8^th Week	Functional genomics I
9^th Week	Functional genomics I
10^th Week	Proteomics I
11^th Week	Proteomics II
12^th Week	Phosphoproteomics, glycoproteomics
13^th Week	System biology
14^th Week	Discussion

Recommended or Required Reading

Applications of Advanced Omics Technologies: From Genes to Metabolites, Virginia Garcia-Canas Alejandro Cifuentes Carolina Simo, Volume 64, 1st Edition
Concepts and Techniques in Genomics and Proteomics, Nachimuthu Saraswathy and Ponnusamy Ramalingam, 2011.
Introduction to Proteomics Tools for the New Biology, DANIEL C. LIEBLER 2002.
Principles of Genome Analysis and Genomics, Sandy B. Primrose,
Richard M. Twyman, Third Edition, 2003

Planned Learning Activities and Teaching Methods

Lecture
Discussion
Questions/Answers
Problem Solving
Project
Presentation

Assessment Methods and Criteria

	Quantity	Percentage (%)
Mid-term	1	30
Project	1	15
Attendance	1	5
Presentation of Article	1	10
Total(%)		60
Contribution of In-term Studies to Overall Grade(%)		60
Contribution of Final Examination to Overall Grade(%)		40
Total(%)		100

ECTS Allocated Based on Student Workload

Activities	Quantity	Duration (Hour)	Total Workload (Hour)
Midterm exam	1	2	2
Preparation for Quiz
Individual or group work	13	2	26
Preparation for Final exam	1	22	22
Course hours	14	3	42
Preparation for Midterm exam	1	18	18
Laboratory (including preparation)
Final exam	1	2	2
Homework
Presentation (including preperation)	1	8	8
Total Work Load			120
Total Work Load / 30 (h)			4
ECTS Credit of the Course			4

Language of Instruction

English

Work Placement(s)

Programme Qualifications / Learning Outcomes

	LO1	LO2	LO3
K1	X	X	X
K2	X	X	X
K3
K4
K5
K6
K7
K8
K9	X	X	X
K10
K11	X	X	X
K12
K13