| Course Type | Elective Course |
|---|
| Course Level | Bachelor's Degree |
|---|
| Year of Study | - |
|---|
| Semester | - |
|---|
| ECTS | 5 |
|---|
| Name of Lecturer(s) |
- |
| Learning Outcomes |
At the end of this course, the students;
- Learn Global and Local Sequence Alignment.
- Informed of Statistical Significance of Sequnce.
- Learn Suffix Tree and Suffix Array.
- Apply Position Specific Scoring Matrix, Hidden Markov Model and Multiple Sequence Alignment.
- Informed of PhyloGenetic Trees.
- Learn Protein Structures.
- Informed of Microarrays.
- Know Biological Networks.
|
| Mode of Delivery | Face to face |
|---|
| Prerequisites | No |
|---|
| Recommended Optional Programme Components | None |
|---|
| Course Description | Global and Local Seuence Alignment. Statistical Significance. Suffix Tree and Suffix Array. Position Specific Scoring Matrix, Hidden Markov Model and Multiple Sequence Alignment. PhyloGenetic Trees. Protein Structures. Microarrays. Biological Networks. |
|---|
| Course Contents |
| WEEK |
TOPICS |
|
1st Week |
Introduction to Bioinformatics |
|
2nd Week |
Central Dogma in Biology |
|
3rd Week |
Protein Structure and Amino Acids |
|
4th Week |
Sequence Alignment |
|
5th Week |
Sequence Alignment |
|
6th Week |
Phylogenetic Trees |
|
7th Week |
Suffix Trees and Arrays |
|
8th Week |
Mid-term |
|
9th Week |
Machine Learning in Bioinformatics |
|
10th Week |
Machine Learning in Bioinformatics |
|
11th Week |
Machine Learning in Bioinformatics |
|
12th Week |
Project Representations |
|
13th Week |
Project Representations |
|
14th Week |
Project Representations |
|
15th Week |
General Review |
|
| Recommended or Required Reading | 1. Zvelebil Marketa, Baul Jeremy O., Understanding Bioinformatics, 1/E, ISBN: 0815340249, Garland Science, 2007
2. Claverie Jean-Michel, Notredame Cedric, Bioinformatics for Dummies, 2/E, ISBN: 0470089857, Wiley Publishing, 2007
|
|---|
| Planned Learning Activities and Teaching Methods |
- Questions/Answers
- Lecture
- Project
- Practice
- Other
|
|---|
| Assessment Methods and Criteria |
|
Quantity |
Percentage (%) |
| Mid-term |
1 |
30 |
| Quiz |
4 |
12 |
| Project |
1 |
15 |
| Attendance |
1 |
3 |
| Total(%) |
|
60 |
| Contribution of In-term Studies to Overall Grade(%) |
|
60 |
| Contribution of Final Examination to Overall Grade(%) |
|
40 |
| Total(%) |
|
100 |
|
| Language of Instruction | Turkish |
|---|
| Work Placement(s) | No |
|---|
