| Course Type | Elective Course |
|---|
| Course Level | Master's Degree With Thesis |
|---|
| Year of Study | - |
|---|
| Semester | - |
|---|
| ECTS | 10 |
|---|
| Name of Lecturer(s) |
|
| Learning Outcomes |
At the end of this course, the students;
- Learn the first-, second- and third-generation sequencing.
- Learn the NGS service providers, DNA and RNA data analysis and storage.
- Learn the impact and applications of NGS.
- Learn the single cell omics technologies.
|
| Mode of Delivery | Face to face |
|---|
| Prerequisites | No |
|---|
| Recommended Optional Programme Components | No |
|---|
| Course Description | This course covers the history of omics applications, the first, second and third-generation sequencing, the NGS service providers, DNA and RNA data analysis and storage, the impact and applications of NGS and the single cell omics technologies. |
|---|
| Course Contents |
| WEEK |
TOPICS |
|
1st Week |
The history of omics applications |
|
2nd Week |
The first, second and third-generation sequencing I |
|
3rd Week |
The first, second and third-generation sequencing II |
|
4th Week |
The first, second and third-generation sequencing III |
|
5th Week |
the NGS service providers, DNA and RNA data analysis I |
|
6th Week |
the NGS service providers, DNA and RNA data analysis II |
|
7th Week |
Data storage |
|
8th Week |
Presentations |
|
9th Week |
NGS applications I |
|
10th Week |
NGS applications II |
|
11th Week |
The single cell omics Technologies I |
|
12th Week |
The single cell omics Technologies II |
|
13th Week |
Presentations |
|
14th Week |
Presentations |
|
| Recommended or Required Reading | Next Generation Sequencing: Advances, Applications and Challenges, Ed. Jerzy Kulski, 2016
InTech, 2012. |
|---|
| Planned Learning Activities and Teaching Methods |
- Lecture
- Discussion
- Questions/Answers
- Problem Solving
- Presentation
|
|---|
| Assessment Methods and Criteria |
|
Quantity |
Percentage (%) |
| Project |
1 |
40 |
| Attendance |
1 |
10 |
| Presentation of Article |
2 |
50 |
| Total(%) |
|
100 |
| Contribution of In-term Studies to Overall Grade(%) |
|
100 |
| Contribution of Final Examination to Overall Grade(%) |
|
0 |
| Total(%) |
|
100 |
|
| ECTS Allocated Based on Student Workload |
| Activities |
Quantity |
Duration (Hour) |
Total Workload (Hour) |
| Midterm exam |
|
|
|
| Preparation for Quiz |
|
|
|
| Individual or group work |
|
|
|
| Preparation for Final exam |
|
|
|
| Course hours |
14 |
3 |
42 |
| Preparation for Midterm exam |
|
|
|
| Laboratory (including preparation) |
|
|
|
| Final exam |
|
|
|
| Homework |
|
|
|
| Presentation (including preperation) |
2 |
90 |
180 |
| Project |
1 |
80 |
80 |
| Total Work Load | 302 |
| Total Work Load / 30 (h) | 10.06 |
| ECTS Credit of the Course | 10 |
|
| Language of Instruction | English |
|---|
| Work Placement(s) | No |
|---|
