Information Package

Master's of Biomedical Engineering with Thesis

BME522

MICROSCOPIC IMAGING

Course Code
BME522
Semester
-
Theory+Practice
3 + 0
ECTS
10
Course TypeElective Course
Course LevelMaster's Degree With Thesis
Year of Study-
Semester-
ECTS10
Name of Lecturer(s) -
Learning Outcomes

At the end of this course, the students;

  1. Learn basic definitions and concepts related with microscope.
  2. Learn basic parts and principles of optical microscope.
  3. Learn relatively new and advanced microscopic techniques.
  4. Comprehend basic electronic circuits related parts of advanced microscopes.
  5. Understand application of advanced microscopes as a nanotool.
  6. Learn sample preparation for each technique.
Mode of DeliveryFace to face
PrerequisitesNo
Recommended Optional Programme ComponentsNone
Course DescriptionOptical microscope: pats, principles, usage field and some specialities., Scanning Electron Microscopes (SEM, TEM): basic principles and their applications., Laser Confocal Microscope: basic principles and applications, Scanning Probe Microscopes (STM, AFM, SHPM, etc.) principles, applications and usage as nanotool., Advantages and disadvantages of each system., Limitations and capabilities., Sample preparations for each technique.
Course Contents
WEEK TOPICS
1st Week Fundamentals of Light Microscopy
2nd Week Application Fields of Light Microscopy
3rd Week Fundamentals of Fluorescence Microscopy
4th Week Principles of Laser Confocal Microscope
5th Week Advantages of Confocal Microscope
6th Week Principles of Electron Microscope
7th Week Varieties of Electron Microscope
8th Week Midterm Exam
9th Week Sample Preparation for Electron Microscope
10th Week Principles of Scanning Probe Microscopy
11th Week Varieties of Scanning Probe Microscopy
12th Week Usage of Scanning Probe Microscopes as Nanotool
13th Week Usage of Scanning Probe Microscopes as Nanotool
14th Week Sample Preparation for Scanning Probe Microscopes, Special Applications of Scanning Probe Microscopes
Recommended or Required Reading(1)Fundamentals of Light Microscopy and Electronic Imaging , Douglas B. Murphy, Wiley-Liss, 2001.
(2)Stephen W. Paddock, Confocal Microscopy Methods and Protocols, Humana, P.J. Goodhew, Electron Microscopy and Analysis, Taylor & Francis, 2001.
Planned Learning Activities and Teaching Methods
  • Lecture
  • Discussion
  • Questions/Answers
  • Practice
Assessment Methods and Criteria
Quantity Percentage (%)
Mid-term 1 30
Assignment 1 10
Quiz 1 10
Project 1 10
Total(%) 60
Contribution of In-term Studies to Overall Grade(%) 60
Contribution of Final Examination to Overall Grade(%) 40
Total(%) 100
ECTS Allocated Based on Student Workload
Activities Quantity Duration (Hour) Total Workload (Hour)
Midterm exam 1 72 72
Preparation for Quiz 1 12 12
Individual or group work 2 3 6
Preparation for Final exam 1 24 24
Course hours 14 3 42
Preparation for Midterm exam 1 11 11
Laboratory (including preparation) 0 0 0
Final exam 1 96 96
Homework 1 12 12
Project 1 12 12
Total Work Load287
Total Work Load / 30 (h)9.56
ECTS Credit of the Course10
Language of InstructionTurkish
Work Placement(s)No
LO1 LO2 LO3 LO4 LO5 LO6
K1
K2
K3 X
K4 X
K5
K6 X
K7 X X X X
K8 X X X