BIOMEDICAL INFORMATICS

BİL623

Course Code: BİL623
Semester: -
Theory+Practice: 3 + 0
ECTS: 10

Course Type

Elective Course

Course Level

Doctorate Of Science

Year of Study

Semester

ECTS

Name of Lecturer(s)

Learning Outcomes

At the end of this course, the students;

Learn basic bioinformation flow
Get practice on using and developing bioinformatics and clinical informatics tools
Meet to research challenges in the field

Mode of Delivery

Face to face

Prerequisites

Recommended Optional Programme Components

None

Course Description

Basic molecular biology, Bioinformation flow, Sequence alignment, Multiple sequence alignment, Alignment heuristics Gene regulation, Gene regulatory networks,Statistical inference, Protein structure prediction, Clinical bioinformatics Suffix trees and suffix arrays, Recent challenges

Course Contents

WEEK	TOPICS
1^st Week	Basic molecular biology
2^nd Week	Bioinformation flow
3^rd Week	Sequence alignment
4^th Week	Multiple sequence alignment
5^th Week	Alignment heuristics
6^th Week	Gene regulation
7^th Week	Gene regulatory networks,Statistical inference
8^th Week	Mid-term
9^th Week	Protein structure prediction
10^th Week	Protein structure prediction
11^th Week	Clinical bioinformatics
12^th Week	Suffix trees and suffix arrays
13^th Week	Recent challenges
14^th Week	Recent challenges

Recommended or Required Reading

Zvelebil Marketa, Baul Jeremy O., Understanding Bioinformatics, 1/E, Garland Science, 2007
Claverie Jean-Michel, Notredame Cedric, Bioinformatics for Dummies, 2/E, ISBN: 0470089857, Wiley Publishing, 2007

Planned Learning Activities and Teaching Methods

Project

Assessment Methods and Criteria

	Quantity	Percentage (%)
Mid-term	1	30
Project	1	30
Total(%)		60
Contribution of In-term Studies to Overall Grade(%)		60
Contribution of Final Examination to Overall Grade(%)		40
Total(%)		100

ECTS Allocated Based on Student Workload

Activities	Quantity	Duration (Hour)	Total Workload (Hour)
Midterm exam	1	2	2
Preparation for Quiz
Individual or group work	14	11	154
Preparation for Final exam	1	69	69
Course hours	14	3	42
Preparation for Midterm exam	1	44	44
Laboratory (including preparation)
Final exam	1	2	2
Homework
Total Work Load			313
Total Work Load / 30 (h)			10.43
ECTS Credit of the Course			10

Language of Instruction

Turkish

Work Placement(s)

Programme Qualifications / Learning Outcomes

	LO1	LO2	LO3
K1	X	X	X
K2
K3	X	X
K4	X	X
K5	X	X
K6	X	X
K7
K8	X	X	X
K9
K10
K11
K12