| Course Type | Elective Course |
|---|
| Course Level | Master's Degree Without Thesis |
|---|
| Year of Study | - |
|---|
| Semester | - |
|---|
| ECTS | 10 |
|---|
| Name of Lecturer(s) |
- |
| Learning Outcomes |
At the end of this course, the students;
- Learn basic bioinformation flow
- Get practice on using and developing bioinformatics and clinical informatics tools
- Meet to research challenges in the field
|
| Mode of Delivery | E-Learning |
|---|
| Prerequisites | No |
|---|
| Recommended Optional Programme Components | None |
|---|
| Course Description | Basic molecular biology, Bioinformation flow, Sequence alignment, Multiple sequence alignment, Alignment heuristics
Gene regulation, Gene regulatory networks,Statistical inference, Protein structure prediction, Clinical bioinformatics
Suffix trees and suffix arrays, Recent challenges |
|---|
| Course Contents |
| WEEK |
TOPICS |
|
1st Week |
Basic molecular biology |
|
2nd Week |
Bioinformation flow |
|
3rd Week |
Sequence alignment |
|
4th Week |
Multiple sequence alignment |
|
5th Week |
Alignment heuristics |
|
6th Week |
Gene regulation |
|
7th Week |
Gene regulatory networks,Statistical inference |
|
8th Week |
Protein structure prediction |
|
9th Week |
Protein structure prediction |
|
10th Week |
Clinical bioinformatics |
|
11th Week |
Suffix trees and suffix arrays |
|
12th Week |
Recent challenges |
|
13th Week |
Recent challenges |
|
14th Week |
Final Exam |
|
| Recommended or Required Reading | Zvelebil Marketa, Baul Jeremy O., Understanding Bioinformatics, 1/E, Garland Science, 2007
Claverie Jean-Michel, Notredame Cedric, Bioinformatics for Dummies, 2/E, ISBN: 0470089857, Wiley Publishing, 2007
|
|---|
| Planned Learning Activities and Teaching Methods |
|
|---|
| Assessment Methods and Criteria |
|
Quantity |
Percentage (%) |
| Assignment |
1 |
20 |
| Total(%) |
|
20 |
| Contribution of In-term Studies to Overall Grade(%) |
|
20 |
| Contribution of Final Examination to Overall Grade(%) |
|
80 |
| Total(%) |
|
100 |
|
| ECTS Allocated Based on Student Workload |
| Activities |
Quantity |
Duration (Hour) |
Total Workload (Hour) |
| Midterm exam |
|
|
|
| Preparation for Quiz |
|
|
|
| Individual or group work |
14 |
3 |
42 |
| Preparation for Final exam |
1 |
40 |
40 |
| Course hours |
14 |
3 |
42 |
| Preparation for Midterm exam |
|
|
|
| Laboratory (including preparation) |
|
|
|
| Final exam |
1 |
2 |
2 |
| Homework |
|
|
|
| Presentation (including preperation) |
1 |
80 |
80 |
| Project |
1 |
80 |
80 |
| Total Work Load | 286 |
| Total Work Load / 30 (h) | 9.53 |
| ECTS Credit of the Course | 10 |
|
| Language of Instruction | Turkish |
|---|
| Work Placement(s) | No |
|---|
